From the realm of “brilliant tools that Sun forget to tell you they wrote”
http://java.sun.com/j2se/javadoc/doccheck/
(posted here because I only just came across it, and its small but brilliant).
Summaries include listing all your packages and giving a “percentage of missing comments” for each.
Also provides copy/pastable “guessed” comments for you to paste in to your source and edit wherever it can.